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- intro on this wiki
- Main UCSC Genome Browser web site
- Beta Test browser site - most up-to-date datasets and features; can be buggy
- File formats - BED format especially is widely used
- Table browser - Browse and download data in different formats
- ENCODE data downloads at UCSC - useful for getting data to work with
Variant calling
- The 1000 Genomes project - catalog of human genetic variants
- Tools
- Broad institute GATK - complex but powerful; used by 1000 Genomes
- File formats
- VCF (Variant Call Format) v4.0 - developed by 1000 Genomes project
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