...
- Tools Used:
- peptideProphet: (http://peptideprophet.sourceforge.net) used to validate peptide hits:
- pepXML output file that has list of validated peptide hits.
- pepXML output file that has list of validated peptide hits.
- peptideProphet: (http://peptideprophet.sourceforge.net) used to validate peptide hits:
3. Protein hits validation
Validate the protein hits using the pepXML peptideProphet output
- Deliverables:
- reports generated by iProphetproteinProphet
- Tools Used:
- ProteinProphet: (http://proteinprophet.sourceforge.net) used to identify high-confident protein hits
- protXML output file that has list of validated protein hits.
- ProteinProphet: (http://proteinprophet.sourceforge.net) used to identify high-confident protein hits