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Comment: Migrated to Confluence 5.3

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Prerequisites for bam2cfg.pl

Change the shebang/header in the bam2cfp.pl from:

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Code Block
sudo cpan install Math::CDF
sudo cpan install Statistics::Descriptive
sudo cpan install GD::Graph
sudo cpan install GD::Graph::histogram

Running Breakdancer

For sanity just update you PATH environmental variable to include looking into the breakdancer directory for bam2cfg.pl and breakdancer_max.