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We wish to acknowledge a great deal of help with creating these web pages and materials from previous instructors of the Intro to NGS Bioinformatics course taught in May 2013 and the Genome Variant Analysis Course 2014 taught in May 2014. Two individuals warrant special mention, the former director of the GSAF Scott Hunicke-Smith, and Jeffrey Barrick have been the driving force behind this class for a number of years, and the majority of the tutorials presented here were developed by them or adapted from their work. |
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The first half of today's class will be done as a continuation of tutorials that you are most interested in. While we have added some new tutorials to the above sections, we also introduce introduced some tutorials here that are more methodology based and less sample based. Choose your own tutorial, and please don't hesitate to ask us what tutorials would be good for you to be working on given your data!
The second half of today's class will be going over how to do things the normal way on TACC which means using the job submission system and commands files.