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Code Block
languagebash
titleStart an idev session
# oridev -m 180 -N 1 -A OTH21164 -r core-ngs-class-06040603 below on# WednesdayTuesday
idev -m 180 -N 1 -A OTH21164 -r core-ngs-class-06030604  # Wednesday

# -or-or, without a reservation:
idev -m 120 -N 1 -A OTH21164 -p development   

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Code Block
languagebash
titleSet up directory for working with FASTQs
# Create a $SCRATCH area to work on data for this course,
# with a sub-directory for pre-processing raw fastq files
mkdir -p $SCRATCH/core_ngs/fastq_prep

# Make symbolic links to the original yeast data:
cd $SCRATCH/core_ngs/fastq_prep
ln -s -f $CORENGS/yeast_stuff/Sample_Yeast_L005_R1.cat.fastq.gz
ln -s -f $CORENGS/yeast_stuff/Sample_Yeast_L005_R2.cat.fastq.gz

# or
ln -sf /work/projects/BioITeam/projects/courses/Core_NGS_Tools/yeast_stuff/ \ 
  Sample_Yeast_L005_R1.cat.fastq.gz
ln -sf /work/projects/BioITeam/projects/courses/Core_NGS_Tools/yeast_stuff/ \
  Sample_Yeast_L005_R2.cat.fastq.gz

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