SSH into
...
lonestar6 and copy files needed for today's exercises.
...
Get set up for the exercises
| Code Block |
|---|
ssh <username>@ls6.tacc.utexas.edu #If you are getting the following error: Corrupted MAC on input, then try this: ssh -m hmac-sha2-512 username@ls6.tacc.utexas.edu cds cd my_rnaseq_course cp -r /work2/projects/BioITeam/projects/courses/rnaseq_course/day_2/reference_2025/STAR_genome day_2/reference/ cp -r /work2/projects/BioITeam/projects/courses/rnaseq_course/day_2/kallisto_exercise day_2/ cp -r /work2/projects/BioITeam/projects/courses/rnaseq_course/day_3_partA . cp -r /work2/projects/BioITeam/projects/courses/rnaseq_course/day_3_partB . |
...
If you've already copied data over, check that the data files required are there.
...
Get set up for the exercises
| Code Block |
|---|
ssh <username>@ls6.tacc.utexas.edu #If you are getting the following error: Corrupted MAC on input, then try this: ssh -m hmac-sha2-512 username@ls6.tacc.utexas.edu cds cd my_rnaseq_course ls day_3_partA/gene_counting_exercise/ ls day_3_partA/gene_expression_exercise/ |
Open another SSH session and request a idev session
...
...
set up idev session in another tab
| Code Block |
|---|
ssh <username>@ls6.tacc.utexas.edu idev -m 120 -q normal -A OTH21164 -r RNAseqrna-seq-class-0611 #Leave out -r RNAseqrna-seq-class-0611 if your TACC id is not part of the reservation |
Go back to Course Outline
...