Everyone develops their own approach to organizing analysis files and differences across investigators can pose a challenge for collaborators co-authoring code. Nonetheless, each project will have a similar set of scripts. These will likely include scripts to a) extract variables, b) create new variables, and c) analyze data and d) produce tables. It is useful to have a main do file that calls and executes each set of scripts in order.
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2) Setup files that each person can identify the location of each type of directory in their file structure. ADD MORE SPECIFICS.
3) A main do file that executes project do files in orderscript that begins with loading original data and ends by producing publication-ready tables. Note that you should nest do files scripts within other do filesscripts. For example, you might have a one stata .do file that executes all of the code to create your analysis files and another . Another do file could to execute all the scripts to do the data analysis. The main do file would call and execute both.
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We are also developing techniques to automate the production of tables for publication. See automate See automate for more.