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Code Block

title	Possible solution using the -z option
collapse	true

cat SRR030257_1.fastq | fastx_trimmer -l 34 -Q 30 -z > SRR030257_1.trimmed.fastq.gz

Code Block

title	Possible solution using gzip yourself
collapse	true

cat SRR030257_1.fastq | fastx_trimmer -l 34 -Q 30 | gzip > SRR030257_1.trimmed.fastq.gz

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