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Warning
titleDo not run on head node

Use showq -u to verify you are still on the idev node.

Code Block
titleUse this command to restart an idev session if you are not on one
collapsetrue
idev  -m 120 -r CCBB_Bio_Summer_School_2016_Day2 -A UT-2015-05-18 -N 2 -n 8
Code Block
languagebash
titleCommands to be executed in order...
samtools view -b -S -o SRR030257.bam SRR030257.sam
samtools sort SRR030257.bam SRR030257.sorted.bam
samtools index SRR030257.sorted.bam
Tip
This is a really common sequence of commands, so you might want to add it to your personal cheat sheet.

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