...
| No Format |
|---|
OOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOO Passed check OOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOOO |
It is a good idea to to use 'find' option like you would on a web browser hitting command F to bring up a find box and hit the back arrow several times looking for the word ' check' which IS preceded by a space. I expect this will show all tests passed with 1 test failing in an area that is being actively developed currently relating to applying mutations to 'gbk' files. This should not cause any issues for your work in the course our outside of it.
| Warning | ||
|---|---|---|
| ||
You see multiple tests have failed, or the make test command takes less than 5 minutes |
Next steps
Now that you have your own copy of breseq, you can:
- Go back to the intro breseq tutorial and map the set of data you worked through the mapping and SNV discovery process so you can compare it directly to the results you saw in the IGV tutorial.
- You may also move onto the advanced breseq tutorial.
- While it doesn't seem that it is directly applicable to anyone's work this year, there is also a tutorial that deals with molecular indexes and lower error rates that uses breseq.
- You could combine all the different parts of the required tutorials, and go back to the read processing tutorial and trim both read1 and read2, then run the improved samples through breseq, and compare the results to running those same files through bowtie2 tutorial and SNV tutorials separately.
- If you aren't sure what you should be working on, as always, just ask and I'll give some recommendations.