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Note

title	The remaining portion of this tutorial requires the runs to have completed

Code Block

language	bash
title	You can also check how many have finished with this command

cd $SCRATCH/GVA_breseq_multi-sample
tail -n 1 logs/*|grep -c "+++   SUCCESSFULLY COMPLETED"

Until the above returns 7 the following commands will not work correctly.

While you wait consider going back to the intro breseq tutorial to rerun the sample that you took through read QC, mapping, SNV calling, and visualization. or skip to the bottom of the page for other potentually useful tutorials.

Grouping .gd files together

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