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Your idev command line will contain 3 5 flags: -m, -r, -A, -n, -N. Using the `idev -h` command, can you figure out what these 3 flags mean and what you told the system you wanted to do?
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From the OPTIONS: section of the idev help output: -m minutes sets time in minutes (default: 30) -r reservation_name requests use of a specific reservation -A account_name sets account name (default: -A none) -n total_tasks Total number of tasks -N nodes Number of nodes So you will request an idev node using the reservation named Genome-Day, where Day is the day of the class I (Mon, Tue, Wed, Thur, Fri) and asked that it be charged to the account named UT-2015-05-18. |
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idev -r Genome-Tue -A UT-2015-05-18 -m ??? -n 48 -N 1 |
The very first line of output should be.
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The two most common choices would be 68 48 and 1 for 68 48 and 1 max possible independent commands at the same time. As long as you are letting the individual programs allocate the number of threads (ie --threads for some programs, -p or -j for others), this choice will not matter. If you want to run multiple commands at the same time (say with a commands file which puts each individual command in the background) you would need to select at least a number equal to the number of commands you want running at the same time (or 68 48 as the max).
Note that in the above, it is the lowercase n that determines the number of tasks per node (1 and 68 48 respectively). The upper case N deals with how many different nodes (computers) you want access to. Programs can not interact across different nodes, so for idev sessions, you only ever want 1 "N"ode. There will be more information about this in Friday when working with the sbatch command. |
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