BME 383J Course Content
Your Instructors
Name | Initials | Affiliation | Expertise |
|---|---|---|---|
SPHS | Director GSAF | Everything, if loosely defined (but especially | |
JF | Research Associate, TACC Life Sciences | high performance computing | |
Matt Vaughn | MWV | Manager, TACC Life Sciences | in absentia |
Jeff Barrick |
| Asst. Prof. Biochemistry | in absentia |
Tuesday Nov. 6th
- Introduction to next-gen sequencing technologies (SPHS - 15 minutes)
- Intro to TACC/Linux (JF - 15 minutes)
- About TACC
- Getting Started at TACC
- If you are new to Linux, there are some basics here, and some tips, techniques, and practice exercises here.
- Introduction to mapping presentation (SHS - 45 minutes)
- Side content: what's this all about? Check out this short wiki page on genome variants
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- Mapping & Variant calling
- Mapping theory (SPHS)
- http://last.cbrc.jp/mcf-kyoto08.pdf
- http//www.cs.utsa.edu%2F~jruan%2Fteaching%2FCS6293_fall_2010%2Fslides%2Fslide5_shortreadmapping.ppt
- Mapping & variant calling practice - haploid (bacteria) (JF)
- Variant calling (homework)
- Mapping theory (SPHS)
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Go to this web page and call variants from real human genomes from the 1000 genomes project. |
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