Table of Contents |
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Day 1: Linux/TACC Introduction and Read Mapping
- Linux refresher
- Using TACC's Lonestar cluster (GVA14)
- Introduction to mapping (bowtie, BWA)
- Introduction to variant calling (SAMtools)
- Documentation
Extras
- Introduction to Bioinformatics Prezi
- Download Presentation on Mappers, etc. \
- Workflow diagram of variant calling
- Diagram of Lonestar's directories
- Diagram of running a job on Lonestar
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