Page Comparison

# If using your own BWA mapped results (Sam files), they should be at:
$SCRATCH/my_rnaseq_course/bwa_exercise 

 
# If not, you can get the results from: 
/corral-repl/utexas/BioITeam/rnaseq_course_2015/bwa_aln_results
 
cds
cd my_rnaseq_course
cp -r /corral-repl/utexas/BioITeam/rnaseq_course_2015/bwa_aln_results .

#For bwa mem results
   cp $SCRATCH/my_rnaseq_course/bwa_exercise/results/bwa_mem/C1_R1.mem.bam* .

 
# If not, you can get the results from: 
/corral-repl/utexas/BioITeam/rnaseq_course_2015/bwa_mem_results
 
cds
cd my_rnaseq_course
cp -r /corral-repl/utexas/BioITeam/rnaseq_course_2015/bwa_mem_results .