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cds
cd my_rnaseq_course
cp -r /corral-repl/utexas/BioITeam/rnaseq_course_2015/cufflinks_results .
cd cufflinks_results |
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We've already gone over how tophat results look here so let's move on to step 2.
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#If you've copied it over successfully:
cat run_commands/commands.cufflinks
#If you don't have a local copy, you can read it from the source:
cat /corral-repl/utexas/BioITeam/rnaseq_course_2015/cufflinks_results/run_commands/commands.cufflinks
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#If you have a local copy:
ls -l C1_R1_clout
#If you don't have a local copy:
ls -l /corral-repl/utexas/BioITeam/rnaseq_course_2015/cufflinks_results/C1_R1_clout
-rw------- 1 daras G-801020 627673 May 17 16:58 genes.fpkm_tracking
-rw------- 1 daras G-801020 1021025 May 17 16:58 isoforms.fpkm_tracking
-rw------- 1 daras G-801020 0 May 17 16:50 skipped.gtf
-rw------- 1 daras G-801020 14784740 May 17 16:58 transcripts.gtf
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