...
launcher_creator.py -n cufflinks -t 01:00:00 -j commands.cufflinks -q development -a CCBB
qsub launcher_creator.py
F) samtools view test.bam 2L:7620-7700
G) scp + open in IGV
Further...
H) sed 's/,/ /g' DESeq_output.csv |awk '{if ((($7>=1)||($7<=1))&&($8<=0.05)) print $2}'|wc -l