Logistics-Day 1

You will need to ssh into ls5 for all the analysis in class. Macs come with terminal, so no installation is required. For windows laptops, install putty and winSCP. Putty is used for sshing into ls5 and winscp is used for transferring files to and from ls5.

Before logging onto TACC servers, multi-factor authentication must be set up. Click here for an overview of this process, and click here to begin setting it up.

You will need to provide your password and a TACC token to successfully log in to lonestar5 or any other TACC cluster.

Login to lonestar5

#If you are using a terminal, open it:

ssh <username>@ls5.tacc.utexas.edu

#If you are using putty, open it and enter the following:

hostname:  ls5.tacc.utexas.edu

#Upon prompting, enter username and password

Copy data over

cds

mkdir my_rnaseq_course

cd my_rnaseq_course

cp -r /corral-repl/utexas/BioITeam/rnaseq_course_2016/day_1_partA . &

cp -r /corral-repl/utexas/BioITeam/rnaseq_course_2016/day_1_partB . &

RNASEQ DATA SURVEY: https://www.surveymonkey.com/r/5C6CBTJ

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