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Bioinformatics Team (BioITeam) at the University of Texas

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Alternative Applications of RNA-seq
Assessing Mapping Results I
Assessing Mappings Results II
Clustering using WGCNA
Day 1 Take Away Points
Day 3 Take Away Points
Day 3 take aways
Day 3 take aways 2015
Day 4 Take Away Points
DESEQ2 GRAPHS
Evaluating your raw data
FASTQ Manipulation Tools
FASTQ Quality Assurance Tools
Gene Category Enrichment using Mann-Whitney U tests
Gene Counting
Gene Set Enrichment Analysis (GSEA)
GO Enrichment
Installing Tools on a Server
Logistics
Logistics-Day 1
Logistics - Day 2
Logistics- Day 4
Mapping with BWA
Mapping with HISAT2
Mapping with STAR
Mapping with Tophat
Mapping with Tophat Exercises
MultiQC
Pathway Analysis
Plotting DESEQ2 Results
Practice time/Bring your own RNA-Seq Data
Pseudomapping with Kallisto
RNA-Seq Approaches
Running the new tuxedo suite
TACC Overview
TAG-Seq Preprocessing
Testing for Differential Expression
The Quickest Unix Refresher ever
Transcript Quantification with Kallisto
Tuxedo Suite For Splice Variant Analysis and Identifying Novel Transcripts II
Using the Stampede2 Cluster
Visualization using CummeRbund
Visualization using Integrated Genome Viewer (IGV)
Where to get publicly available RNA-Seq data

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Using the Stampede2 Cluster

Using the Stampede2 Cluster

Owned by Dhivya Arasappan

Jun 03, 2021

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