Day 4 Take Aways

We started with 6 samples across two conditions, with 20 million short reads each and from that, we've obtained biological processes that may be different between these two conditions.
Downstream analysis
1. A genome browser like IGV should be used to roughly check your data, but especially to check if results look right.
2. Many R packages are available, not only for statistics, but for plotting graphs (like cummeRbund), looking for enriched biological terms and pathways (goseq).