Publications for Core

(1) Yang, K.; Bryan, C. Human 8‐Oxoguanine Glycosylase OGG1 Cleaves Abasic Sites and Covalently Conjugates to 3′‐DNA Termini via Cysteine and Histidine Addition. ChemBioChem 2024, e202400705. Human 8‐Oxoguanine Glycosylase OGG1 Cleaves Abasic Sites and Covalently Conjugates to 3′‐DNA Termini via Cysteine and Histidine Addition .

(2) Wang, Y.; Zhou, J.; He, W.; Fu, R.; Shi, L.; Dang, N. K.; Liu, B.; Xu, H.; Cheng, X.; Bedford, M. T. SART3 Reads Methylarginine-Marked Glycine- and Arginine-Rich Motifs. Cell Reports 2024, 43 (7), 114459. https://doi.org/10.1016/j.celrep.2024.114459 .

(3) Peng, Y.; Bryan, C.; Yang, K. Mass Spectrometry Evidence for Forming Schiff Base 3′-DNA-Histone Cross-Links from Abasic Sites in Vitro and in Human Cells. Chem. Res. Toxicol. 2024, 37 (2), 216–219. https://doi.org/10.1021/acs.chemrestox.3c00377 .

(4) Motta, E. V. S.; De Jong, T. K.; Gage, A.; Edwards, J. A.; Moran, N. A. Glyphosate Effects on Growth and Biofilm Formation in Bee Gut Symbionts and Diverse Associated Bacteria. Appl Environ Microbiol 2024, 90 (8), e00515-24. https://doi.org/10.1128/aem.00515-24 .

(5) Morrison, C. R.; Hart, L.; Wolf, A. A.; Sedio, B. E.; Armstrong, W.; Gilbert, L. E. Growth‐chemical Defence‐metabolomic Expression Trade‐off Is Relaxed as Soil Nutrient Availability Increases for a Tropical Passion Vine. Functional Ecology 2024, 38 (5), 1320–1337. https://doi.org/10.1111/1365-2435.14537 .

(6) Moreno, R. Y.; Panina, S. B.; Irani, S.; Hardtke, H. A.; Stephenson, R.; Floyd, B. M.; Marcotte, E. M.; Zhang, Q.; Zhang, Y. J. Thr⁴ Phosphorylation on RNA Pol II Occurs at Early Transcription Regulating 3′-End Processing. Sci. Adv. 2024, 10 (36), eadq0350. Thr4 phosphorylation on RNA Pol II occurs at early transcription regulating 3′-end processing .

(7) Hardtke, H. A.; Moreno, R. Y.; Zhang, Y. J. Protocol for the in Vitro Reconstruction of Site-Specifically Phosphorylated RNA Pol II to Identify the Recruitment of Novel Transcription Regulators. STAR Protocols 2024, 5 (3), 103277. https://doi.org/10.1016/j.xpro.2024.103277.

(8) Black, J. J.; Johnson, A. W. Release of the Ribosome Biogenesis Factor Bud23 from Small Subunit Precursors in Yeast. 2024.

(9) Zhao, Q.; Rangan, R.; Weng, S.; Özdemir, C.; Sarinay Cenik, E. Inhibition of Ribosome Biogenesis in the Epidermis Is Sufficient to Trigger Organism-Wide Growth Quiescence Independently of Nutritional Status in C. Elegans. PLoS Biol 2023, 21 (8), e3002276. Inhibition of ribosome biogenesis in the epidermis is sufficient to trigger organism-wide growth quiescence independently of nutritional status in C. elegans .

(10) Yelland, J. N.; Bravo, J. P. K.; Black, J. J.; Taylor, D. W.; Johnson, A. W. A Single 2′-O-Methylation of Ribosomal RNA Gates Assembly of a Functional Ribosome. Nat Struct Mol Biol 2023, 30 (1), 91–98. https://doi.org/10.1038/s41594-022-00891-8.

(11) Wei, X.; Yang, K. PARP1 Incises Abasic Sites and Covalently Cross-Links to 3′-DNA Termini via Cysteine Addition Not Reductive Amination. Biochemistry 2023, 62 (10), 1527–1530. PARP1 Incises Abasic Sites and Covalently Cross-links to 3′-DNA Termini via Cysteine Addition Not Reductive Amination .

(12) Smith, K. R.; Paul, S.; Dong, Q.; Anannya, O.; Oldenburg, D. G.; Forrest, J. C.; McBride, K. M.; Krug, L. T. Uracil-DNA Glycosylase of Murine Gammaherpesvirus 68 Binds Cognate Viral Replication Factors Independently of Its Catalytic Residues. mSphere 2023, 8 (5), e00278-23. Uracil-DNA glycosylase of murine gammaherpesvirus 68 binds cognate viral replication factors independently of its catalytic residues | mSphere .

(13) Randall, J. R.; Groover, K. E.; O’Donnell, A. C.; Garza, J. M.; Cole, T. J.; Davies, B. W. Adapting Antibacterial Display to Identify Serum Active Macrocyclic Peptide Antibiotics. Microbiology July 28, 2023. Adapting antibacterial display to identify serum active macrocyclic peptide antibiotics .

(14) Peng, Y.; Wei, X.; Yang, K. Synthesis and Excision Repair of Site-Specific 3′-End DNA-Histone Cross-Links Derived from Abasic Sites. Bioconjugate Chem. 2023, 34 (6), 983–987. https://doi.org/10.1021/acs.bioconjchem.3c00156 .

(15) Ma, C.-H.; Kumar, D.; Jayaram, M.; Ghosh, S. K.; Iyer, V. R. The Selfish Yeast Plasmid Exploits a SWI/SNF-Type Chromatin Remodeling Complex for Hitchhiking on Chromosomes and Ensuring High-Fidelity Propagation. PLoS Genet 2023, 19 (10), e1010986. The selfish yeast plasmid exploits a SWI/SNF-type chromatin remodeling complex for hitchhiking on chromosomes and ensuring high-fidelity propagation .

(16) Lancaster, E. B.; Johnson, W. H.; LeVieux, J. A.; Hardtke, H. A.; Zhang, Y. J.; Whitman, C. P. A Mutagenic Analysis of NahE, a Hydratase-Aldolase in the Naphthalene Degradative Pathway. Archives of Biochemistry and Biophysics 2023, 733, 109471. https://doi.org/10.1016/j.abb.2022.109471.

(17) Gómez-Garzón, C.; Payne, S. M. Divide and Conquer: Genetics, Mechanism, and Evolution of the Ferrous Iron Transporter Feo in Helicobacter Pylori. Front. Microbiol. 2023, 14, 1219359. Frontiers | Divide and conquer: genetics, mechanism, and evolution of the ferrous iron transporter Feo in Helicobacter pylori .

(18) Ellis, J. R.; Bull, J. J.; Rowley, P. A. Fungal Glycoside Hydrolases Display Unique Specificities for Polysaccharides and Staphylococcus Aureus Biofilms. Microorganisms 2023, 11 (2), 293. Fungal Glycoside Hydrolases Display Unique Specificities for Polysaccharides and Staphylococcus aureus Biofilms .

(19) DePaolis, M.; De Respino, S.; Samineni, L.; Brighton, S.; Kumar, M. Cottonseed Extract as a Coagulant for Water Treatment. Environ. Sci.: Adv. 2023, 2 (2), 227–234. Cottonseed extract as a coagulant for water treatment .

(20) Zhao, Q.; Rangan, R.; Weng, S.; Özdemir, C.; Cenik, E. S. Hypodermal Ribosome Synthesis Inhibition Induces a Nutrition-Uncoupled Organism-Wide Growth Quiescence in C. Elegans. Developmental Biology September 30, 2022. https://doi.org/10.1101/2022.09.28.509886 .

(21) Wei, X.; Person, M. D.; Yang, K. Tyrosyl-DNA Phosphodiesterase 1 Excises the 3′-DNA-ALKBH1 Cross-Link and Its Application for 3′-DNA-ALKBH1 Cross-Link Characterization by LC-MS/MS. DNA Repair 2022, 119, 103391. https://doi.org/10.1016/j.dnarep.2022.103391.

(22) Motta, E. V.; Gage, A.; Smith, T. E.; Blake, K. J.; Kwong, W. K.; Riddington, I. M.; Moran, N. Host-Microbiome Metabolism of a Plant Toxin in Bees. eLife 2022, 11, e82595. https://doi.org/10.7554/eLife.82595 .

(23) Motta, E. V. S.; Gage, A.; Smith, T. E.; Blake, K. J.; Kwong, W. K.; Riddington, I. M.; Moran, N. A. Cooperative Host-Microbe Metabolism of a Plant Toxin in Bees. Ecology August 27, 2022. https://doi.org/10.1101/2022.08.25.505265 .

(24) Li, Z. The Genomic Basis of Evolutionary Novelties in a Leafhopper. 2022.

(25) Joaquín-Ovalle, F.; Guihurt, G.; Barcelo-Bovea, V.; Hani-Saba, A.; Fontanet-Gómez, N.; Ramirez-Paz, J.; Kashino, Y.; Torres-Martinez, Z.; Doble-Cacho, K.; Delinois, L.; Delgado, Y.; Griebenow, K. Oxidative Stress- and Autophagy-Inducing Effects of PSI-LHCI from Botryococcus Braunii in Breast Cancer Cells. BioTech 2022, 11 (2), 9. https://doi.org/10.3390/biotech11020009 .

(26) Gadush, M. V.; Sautto, G. A.; Chandrasekaran, H.; Bensussan, A.; Ross, T. M.; Ippolito, G. C.; Person, M. D. Template-Assisted De Novo Sequencing of SARS-CoV-2 and Influenza Monoclonal Antibodies by Mass Spectrometry. J. Proteome Res. 2022, 21 (7), 1616–1627. https://doi.org/10.1021/acs.jproteome.1c00913 .