Page Comparison

#look at the file
less test_reference.fasta


#note this may not work on a Mac, try on TACC if it doesn't
cd in_silico_digestion
cat test_reference.fasta | tr -d "\n" | grep -o -E "CATG.{100,300}AATT" | wc -l
cat test_reference.fasta | tr -d "\n" | grep -o -E "CATG.{100,350}AATT" | wc -l