Introduction to RAD-seq 2018

course slides

course files

Setup:

Log into stampede2

Installations

Get course files

Exercises:

Planning:

in silico digestion

Data Processing:

ddRAD data processing

process 2bRAD

denovo 2bRAD

Analysis:

PCA example

DAPC example

Admixture example

Pungitius exercise

Full M. cavernosa pipeline

Other key links:

2bRAD_denovo

2bRAD_GATK