Get 2bRAD scripts:
| Code Block | ||
|---|---|---|
| ||
#download the scripts from github
cdh
git clone https://github.com/z0on/2bRAD_denovo.git
#add the path to 2bRAD to your PATH variable
cd 2bRAD_denovo
2bRAD_PATH=$(pwd)
export PATH="$PATH:~/2bRAD_denovo/"
#test you have access
cds
vcf2map.pl -h
#if you get a help menus it worked |
Check the reads
We sequenced four different samples with single-end reads across two lanes on an Illumina Hiseq.
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