...
- Genome Assembly
- Genome Annotation
- Evaluating & Visualizing assemblies
- Custom Genome Databases Introduction to GMOD and/or SequenceServer
Resources
- Resources: tool list, file formats & more
- Scott's list of linux one-liners
- Exercises
...
Notes from 5/17/12:
Conventions decided on - expands for hints, formats for command prompt/code
Aaron to write .sge maker script
All qsub's will run "./commands"
All examples have to have a "commands" file.
AB/DC to tacc-ify scripts; SPHS to put up chr20 fastq's, bams, and vcf's for example.
Append GATK to diploid calling.
Daechan original shell scripting page