Resources

A) Questions with ngs data? - http://seqanswers.com/

B) Great list of NGS Educational resources : NGS Course Resources

C) Two coursera specializations which are EXCELLENT:

 Genomic data science: https://www.coursera.org/specializations/genomic-data-science

 Bioinformatics : https://www.coursera.org/specializations/bioinformatics

D)  R and python interactive tutorials (highly recommend, but there is a small charge):  https://www.datacamp.com/tracks/r-programmer

E) BioIteam wiki - this wiki we are in now. Lots of tool documentation, informations about pipelines and scripts we've written that are available to the community etc.

F) Bioinformatics Consulting Group- We are in FNT 1st floor.  Come stop by anytime for free consultations on all things bioinformatics.

G) Unix/Bash tutorials: https://ryanstutorials.net/linuxtutorial/ https://ryanstutorials.net/bash-scripting-tutorial/

H) My recommendations for QC cutoffs with traditional RNA-seq data: Dhivya's suggestions for QC cutoffs

I) Example biomart script to convert ids: