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| language | bash |
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| title | Start an idev session |
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idev -p development -m 120 -A UT-2015-05-18 -N 1 -nA 24OTH21164 --reservation=BIO_DATA_week_1r CoreNGSday5 |
Copy over the yeast RNA-seq files we'll need (also copy the GFF gene annotation file if you didn't make one).
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| idev -p development -m 120 -A UT-2015-05-18 -N 1 -nA 68OTH21164 --reservation=BIO_DATA_week_1r CoreNGSday5
module load biocontainers
module load samtools
module load bedtools
mkdir -p $SCRATCH/core_ngs/bedtools
cd $SCRATCH/core_ngs/bedtools
cp $CORENGS/yeast_rna/*.gff .
cp $CORENGS/yeast_rna/sc_genes.bed* .
cp $CORENGS/yeast_rna/yeast_mrna.sort.filt.bam* . |
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