Title: Read Mapping with bowtie2 Tutorial GVA2020  
Owner: Deatherage, Daniel E
Creator: Deatherage, Daniel E Jun 21, 2020
Last Changed by: Deatherage, Daniel E Jun 22, 2020
Tiny Link: (useful for email) https://cloud.wikis.utexas.edu/wiki/x/jSTYAg
Export As: Word · PDF  
Bioinformatics Team (BioITeam) at the University of Texas (12)
    Page: Advanced bowtie2 -- GVA202
    Page: Advanced breseq GVA2020
    Page: Breseq - installation GVA2020
    Page: Genome Variant Analysis Course 2020
    Page: Human Trios -- GVA2020
    Page: IGV Tutorial -- GVA2020
    Page: IGV Tutorial -- GVA2021
    Page: IGV Tutorial -- GVA2022
    Page: Lonestar5 Breseq Tutorial GVA2020
    Page: Novel DNA Identification -- GVA2020
    Page: Single Nucleotide Variant (SNV) calling Tutorial GVA2020
    Page: Structural Variant (SV) calling with SVdetect 2020
Labels
There are no labels assigned to this page.
Time Editor  
Jun 22, 2020 12:42 Deatherage, Daniel E View Changes
Jun 22, 2020 12:36 Deatherage, Daniel E View Changes
Jun 21, 2020 21:55 Deatherage, Daniel E View Changes
Jun 21, 2020 21:48 Deatherage, Daniel E View Changes
Jun 21, 2020 21:07 Deatherage, Daniel E  
Outgoing Links
External Links (11)
    www.ncbi.nlm.nih.gov/nuccore/NC_012967.1
    https://github.com/bioperl/bioperl-live/blob/master/scripts…
    www.ncbi.nlm.nih.gov/pubmed/19838166
    www.ebi.ac.uk/ena/data/view/SRR030257&display=html
    samtools.sourceforge.net/SAM1.pdf
    www.ncbi.nlm.nih.gov/sra
    en.wikipedia.org/wiki/List_of_sequence_alignment_software#S…
    genome.sph.umich.edu/wiki/SAM
    sourceforge.net/projects/bowtie-bio/files/bowtie2/
    bowtie-bio.sourceforge.net/bowtie2/manual.shtml
    https://utexas.atlassian.net/wiki/pages/viewpage.action?pag…
Bioinformatics Team (BioITeam) at the University of Texas (7)     Page: Launching an iDev session
    Page: Evaluating and processing raw sequencing data GVA2020
    Page: Mapping tutorial
    Page: Mapping tutorial (bowtie2, bwa) (GVA14)
    Page: Genome Variant Analysis Course 2020
    Page: Linux and Lonestar 5 Setup -- GVA2020
    Page: Mapping with bowtie2 Tutorial