Title: Genome Variant Analysis Course 2023  
Owner: Deatherage, Daniel E
Creator: Deatherage, Daniel E Jun 12, 2023
Last Changed by: Deatherage, Daniel E Jun 23, 2023
Tiny Link: (useful for email) https://cloud.wikis.utexas.edu/wiki/x/UUXYAg
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Bioinformatics Team (BioITeam) at the University of Texas (26)
    Page: Accessing stampede2 (ssh on Windows10)
    Page: Advanced breseq GVA2023
    Page: Annotating plasmids with pLannotate GVA2023
    Page: Annovar 2023
    Page: Bedtools tutorial -- GVA2023
    Page: Breseq with multiple references GVA2023
    Page: Evaluating and processing raw sequencing data GVA2023
    Page: Exome Capture Metrics GVA2023
    Page: fastp - GVA2023
    Page: Genome Analysis Toolkit (GATK) . -- GVA2023
    Page: Genome Assembly (SPAdes) -- GVA2023
    Page: GVA2023 - Class Review
    Page: Human Trios -- GVA2023
    Page: IGV Tutorial -- GVA2023
    Page: Launching an iDev session GVA2023
    Page: Linux and stampede2 Setup -- GVA2023
    Page: Long Read Genome Assembly GVA2023
    Page: Molecular Index Error correction GVA2023
    Page: MultiQC - fastQC summary tool -- GVA2023
    Page: Nanopore Reads GVA2023
    Page: Novel DNA Identification -- GVA2023
    Page: Read Mapping with bowtie2 Tutorial GVA2023
    Page: Single Nucleotide Variant (SNV) calling Tutorial GVA2023
    Page: SSCS vs Trimmed Read Variant calls GVA2023
    Page: Stampede2 Breseq Tutorial GVA2023
    Page: Structural Variant (SV) calling with SVdetect 2023
Hierarchy
Children (31)
    Page: Accessing stampede2 (ssh on MacOs)
    Page: Accessing stampede2 (ssh on Windows10)
    Page: Advanced bowtie2 -- GVA2023
    Page: Advanced breseq GVA2023
    Page: Annotating plasmids with pLannotate GVA2023
    Page: Annovar 2023
    Page: Bedtools tutorial -- GVA2023
    Page: Breseq with multiple references GVA2023
    Page: Cheat Sheet Resources
    Page: Evaluating and processing raw sequencing data GVA2023
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Time Editor  
Jun 23, 2023 08:28 Deatherage, Daniel E View Changes
Jun 23, 2023 03:27 Deatherage, Daniel E View Changes
Jun 23, 2023 02:04 Deatherage, Daniel E View Changes
Jun 22, 2023 23:34 Deatherage, Daniel E View Changes
Jun 21, 2023 21:29 Deatherage, Daniel E  
Outgoing Links
External Links (4)
    https://utexas.atlassian.net/wiki/display/GSAF/About+Us#Sco…
    https://www.tacc.utexas.edu/
    https://barricklab.org/twiki/bin/view/Lab
    barricklab.org/
Bioinformatics Team (BioITeam) at the University of Texas (31)     Page: Structural Variant (SV) calling with SVdetect 2023
    Page: Genome Variant Analysis Course 2023
    Page: Annovar 2023
    Page: Novel DNA Identification -- GVA2023
    Page: Read Mapping with bowtie2 Tutorial GVA2023
    Page: Exome Capture Metrics GVA2023
    Page: GVA2023 Day 1 Environment Checkup and Catchup
    Page: Single Nucleotide Variant (SNV) calling Tutorial GVA2023
    Page: Linux and stampede2 Setup -- GVA2023
    Page: Evaluating and processing raw sequencing data GVA2023
    Page: MultiQC - fastQC summary tool -- GVA2023
    Page: Breseq with multiple references GVA2023
    Page: Long Read Genome Assembly GVA2023
    Page: Cheat Sheet Resources
    Page: Advanced bowtie2 -- GVA2023
    Page: IGV Tutorial -- GVA2023
    Page: GVA2023 - Class Review
    Page: Accessing stampede2 (ssh on MacOs)
    Page: Advanced breseq GVA2023
    Page: Genome Assembly (SPAdes) -- GVA2023
    Page: fastp - GVA2023
    Page: Annotating plasmids with pLannotate GVA2023
    Page: Genome Analysis Toolkit (GATK) . -- GVA2023
    Page: Human Trios -- GVA2023
    Page: Nanopore Reads GVA2023
    Page: Accessing stampede2 (ssh on Windows10)
    Page: Molecular Index Error correction GVA2023
    Page: Bedtools tutorial -- GVA2023
    Page: Launching an iDev session GVA2023
    Page: SSCS vs Trimmed Read Variant calls GVA2023
    Page: Stampede2 Breseq Tutorial GVA2023