This page and its subpages serve as a preliminary user guide for PyReconstruct, an extensible successor to RECONSTRUCT™ written from the ground up in Python. Please have a look at the source code on our lab's GitHub site. Question can be directed toward PyReconstruct's primary developers, Julian Falco (julian.falco@utexas.edu) and Michael Chirillo (m.chirillo@utexas.edu). You can navigate around this wiki by clicking the links below or the links in the sidebar to the left.
Install PyReconstruct and get it up and running. | |
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Start a new series and begin tracing. | |
Understand the layout and the various functions of the main window. | |
Find out more about alignments and aligning. | |
Get access to lists and list operations. | |
Series Operations | Perform operations with and to your series. |
Visualize objects in 3D. | |
Leave comments in the field, assign curators to objects, and more. | |
Explore a random collection of possibilities. |
Main window
List / List-operations
- Regular expressions
- Section lists / operations
- Trace list / tags
- Object list / groups
- Z-trace list
3D scene
3D Scene stuff...
Series operations
Calibration
This stuff about calibration...
Alignments
This stuff about alignments...
Importing / exporting
- Traces
- Aligments
- Palettes
- Exporting back to legacy
Propagation operations
This stuff about propagating
Meta-data
Commenting / Flags
Curating
Miscellaneous
Extra stuff here...