Importing genome into IGV.
Preparing reference file.
Convert GenBank file to GFF/GFF3
module load bioperl
GFF
bp_genbank2gff --file input.gbk --stdout > output.gff
GFF3
bp_genbank2gff3.pl input.gbk
Convert Genbank file to Fasta
bp_seqconvert --from genbank --to fasta < input.gbk > output.fasta
Index Fasta file.
samtools index input.fasta
Import to IGV
Click on File -> Import Genome and you should be presented with the following window.
Enter the ID and Name of the Genome you are working with and select the path to your *.fasta file (the index, *.fai file needs to be in the same directory), then select the path to your *.gff file for the Gene File.