Importing genome into IGV.
Preparing reference file.
Convert GenBank file to GFF3
login1$ module load bioperl login1$ bp_genbank2gff3.pl input.gbk
Convert Genbank file to Fasta
bp_seqconvert --from genbank --to fasta < input.gbk > output.fasta
Index Fasta file.
samtools index input.fasta
IGV
Click on File -> Import Genome and you should be presented with the following window.