Week 12: Population Genetics (Elizabeth Milano)

Liz Milano will lecture on population genetics analyses using R. Liz is a graduate student in Integrative Biology at the University of Texas at Austin. 

Please install the following packages before class:adegenet, ade4, pegas, MASS, ape, genetics.

Lecture Slides: 

R code: 

More Resources:

• ?More on Principle Components Analysis: http://www.r-bloggers.com/a-new-dimension-to-principal-components-analysis/

• ?Use R! Books (UT library ebook link to full text)

  • ?Applied Statistical Genetics with R: http://link.springer.com/book/10.1007%2F978-0-387-89554-3

  • ?Analysis of Phylogenetics and Evolution with R: http://link.springer.com/book/10.1007%2F978-0-387-35100-1

• ?Next-gen sequencing: http://www.bioconductor.org/

• Package for microbe popgen: http://grunwaldlab.cgrb.oregonstate.edu/poppr-r-package-population-genetic