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Code Block
languagebash
titleStart an idev session
idev -m 120 -N 1 -A OTH21164 -r core-ngs-class-0606

# or, without a reservation
idev -m 120 -N 1 -A OTH21164 -p development 

module load biocontainers
module load bedtools
bedtools --version   # should be bedtools v2.27.1

...

Expand
titleMake sure you're in an idev session


Code Block
languagebash
titleStart an idev session
idev -m 120 -N 1 -A OTH21164 -r core-ngs-class-0606

# or, without a reservation:
idev -m 120 -N 1 -A OTH21164 -p development 

module load biocontainers
module load bedtools
bedtools --version   # should be bedtools v2.27.1


...

Expand
titleMake sure you're in an idev session


Code Block
languagebash
titleStart an idev session
idev -m 120 -N 1 -A OTH21164 -r core-ngs-class-0606

# or, without a reservation
idev -m 120 -N 1 -A OTH21164 -p development 

module load biocontainers
module load bedtools
bedtools --version   # should be bedtools v2.27.1


...

Expand
titleSetup (if needed)


Code Block
languagebash
idev -m 120 -N 1 -A OTH21164 -r core-ngs-class-0606

# or, without a reservation:
idev -m 120 -N 1 -A OTH21164 -p development

module load biocontainers
module load samtools
module load bedtools

mkdir -p $SCRATCH/core_ngs/bedtools_multicov
cd $SCRATCH/core_ngs/bedtools_multicov
cp $CORENGS/catchup/bedtools_merge/merged*bed .
cp $CORENGS/yeast_rnaseq/yeast_mrna.sort.filt.bam* .


...

Expand
titleMake sure you're in an idev session


Code Block
languagebash
titleStart an idev session
idev -m 120 -N 1 -A OTH21164 -r core-ngs-class-0606

# or, without a reservation:
idev -m 120 -N 1 -A OTH21164 -p development 

module load biocontainers
module load bedtools
bedtools --version   # should be bedtools v2.27.1


...