Title: Analysis using BEDTools  
Owner: Daechan Park
Creator: Daechan Park May 13, 2014
Last Changed by: Anna Battenhouse Jun 04, 2025
Tiny Link: (useful for email) https://cloud.wikis.utexas.edu/wiki/x/nwc5Aw
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Core NGS Tools (3)
    Page: Core NGS Resources
    Home page: Core NGS Tools Home
    Page: Day 5: Post-Alignment Analysis
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Jun 04, 2025 14:32 Anna Battenhouse View Changes
Jun 02, 2025 16:33 Anna Battenhouse View Changes
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Jun 02, 2025 15:51 Anna Battenhouse View Changes
Jun 05, 2024 17:46 Anna Battenhouse  
Outgoing Links
External Links (22)
    https://genome.ucsc.edu/goldenpath/help/bigWig.html
    https://genome.ucsc.edu/FAQ/FAQformat.html#format1
    bedtools.readthedocs.io/en/latest/content/bedtools-suite.ht…
    bedtools.readthedocs.io/en/latest/content/tools/subtract.ht…
    https://genome.ucsc.edu/FAQ/FAQformat.html#format4
    https://bedtools.readthedocs.io/en/latest/content/tools/gen…
    bedtools.readthedocs.io/en/latest/content/tools/coverage.ht…
    https://genome.ucsc.edu/goldenpath/help/bedgraph.html
    bedtools.readthedocs.io/en/stable/content/tools/closest.htm…
    https://genome.ucsc.edu/
    https://www.gencodegenes.org/
    bedtools.readthedocs.io/en/latest/content/tools/getfasta.ht…
    bedtools.readthedocs.io/en/latest/content/tools/intersect.h…
    https://bedtools.readthedocs.io/en/latest/content/tools/cov…
    https://useast.ensembl.org/info/website/upload/gff3.html
    bedtools.readthedocs.io/en/latest/content/tools/merge.html
    genome.ucsc.edu/FAQ/FAQformat.html
    https://software.broadinstitute.org/software/igv/download
    bedtools.readthedocs.io/en/latest/content/tools/multicov.ht…
    bedtools.readthedocs.io/en/latest/content/tools/bamtofastq.…
    https://genome.ucsc.edu/FAQ/FAQformat.html#format6.1
    bedtools.readthedocs.io/en/latest/content/tools/bamtobed.ht…
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