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We will meet at FNT 1.104 from Monday - Friday 1-4pm for our classes. You are strongly encouraged to attend in person, but if you would like to attend virtually, use this zoom link: https://utexas.zoom.us/j/91424696609 Zoom Instructions: Please make sure your zoom version is updated ( and that you have a zoom account )-- this is required to join a UT-sponsored Zoom session. See this link for more details about zoom requirements: https://zoom.its.utexas.edu/home Other setup: Please make sure you have an ssh client installed on your computer. All macs come with terminal, so no installation is required. For windows laptops, install putty and winSCP. You will also need a TACC account with multi factor authentication set up. |
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Jackson Saigusa (Teaching Assistant) | CNS | Bulk RNA-Seq, R, Unix |
Day 1: Introduction to RNA-Seq
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- Logistics-Day 3
- The Big Picture
- Part A: Differential expression of annotated genes/transcripts
- Part B: (OPTIONAL) The new tuxedo suite for finding novel transcripts
- DETOUR: Where to get publicly available RNA-Seq data
- Day 3 take aways
Day 4: Downstream Analysis of Differentially Expressed Genes and 3' Targeted RNA-Seq
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| Note | ||
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Many thanks to Dr. Scott Hunicke-Smith and Dr. Jeff Barrick who taught the first Introduction to NGS course at UT. Many slides and wiki pages have been borrowed and adapted from their initial course. Also, thanks to Dennis Wylie, Anna Battenhouse, Benni Goetz who have also provided some material for this course |