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Bioinformatics Services
CBRS Mini Symposium
BCG Full Service Pipelines
zArchive
TACC stuff
Old Home page
Old BCG Full Service Pipelines
Training
Bioinformatics Courses and Content
Introduction to RNA Seq Course
Alternative Applications of RNA-seq
Assessing Mapping Results I
Assessing Mappings Results II
Clustering using WGCNA
Day 1 Take Away Points
Day 3 Take Away Points
Day 3 take aways
Day 3 take aways 2015
Day 4 Take Away Points
DESEQ2 GRAPHS
Evaluating your raw data
FASTQ Manipulation Tools
FASTQ Quality Assurance Tools
Gene Category Enrichment using Mann-Whitney U tests
Gene Counting
Gene Set Enrichment Analysis (GSEA)
GO Enrichment
Installing Tools on a Server
Logistics
Logistics-Day 1
Logistics - Day 2
Logistics- Day 4
Mapping with BWA
Mapping with HISAT2
Mapping with STAR
Mapping with Tophat
Mapping with Tophat Exercises
MultiQC
Pathway Analysis
Plotting DESEQ2 Results
Practice time/Bring your own RNA-Seq Data
Pseudomapping with Kallisto
RNA-Seq Approaches
Running the new tuxedo suite
Single Cell RNA-Seq Script and Data
TACC Overview
TAG-Seq Preprocessing
Testing for Differential Expression
The Quickest Unix Refresher ever
Transcript Quantification with Kallisto
Tuxedo Suite For Splice Variant Analysis and Identifying Novel Transcripts II
Using the Stampede2 Cluster
Visualization using CummeRbund
Visualization using Integrated Genome Viewer (IGV)
Where to get publicly available RNA-Seq data
Genome Variant Analysis Course 2014
Genome Variant Analysis Course 2015
Genome Variant Analysis Course 2016
Genome Variant Analysis Course 2017
Genome Variant Analysis Course 2019
Genome Variant Analysis Course 2020
Genome Variant Analysis Course 2021
Genome Variant Analysis Course 2022
Introduction to NGS Short Course 2015
Introduction to RAD-seq 2018
Introduction to RAD-seq short course 2017
Introduction to RNA Seq Course 2014
Introduction to RNA Seq Short Course Commands
Introduction To TACC Short Course Cheats
NGS RNA-seq exploration short course
Introduction to TACC (Video Tutorials):
Genome Variant Analysis Course 2023
SSC Intro to NGS Bioinformatics Course
BME 383J Course Content
Obsolete NGS course materials
Relevant classes offered at UT System Schools
Short Training Topics
Software
How to join the BioITeam
File lists
Bioinformatic Jobs at UT
Wish list
How-to articles
Appsoma-based pipeline development
Byte Club
Blogs
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