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Bioinformatics Services
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CBRS Mini Symposium
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BCG Full Service Pipelines
zArchive
TACC stuff
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Old Home page
Old BCG Full Service Pipelines
Training
Bioinformatics Courses and Content
Introduction to RNA Seq Course
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Alternative Applications of RNA-seq
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Assessing Mapping Results I
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Assessing Mappings Results II
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Clustering using WGCNA
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Day 1 Take Away Points
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Day 3 Take Away Points
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Day 3 take aways
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Day 3 take aways 2015
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Day 4 Take Away Points
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DESEQ2 GRAPHS
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Evaluating your raw data
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FASTQ Manipulation Tools
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FASTQ Quality Assurance Tools
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Gene Category Enrichment using Mann-Whitney U tests
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Gene Counting
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Gene Set Enrichment Analysis (GSEA)
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GO Enrichment
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Installing Tools on a Server
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Logistics
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Logistics-Day 1
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Logistics - Day 2
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Logistics- Day 4
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Mapping with BWA
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Mapping with HISAT2
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Mapping with STAR
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Mapping with Tophat
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Mapping with Tophat Exercises
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MultiQC
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Pathway Analysis
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Plotting DESEQ2 Results
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Practice time/Bring your own RNA-Seq Data
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Pseudomapping with Kallisto
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RNA-Seq Approaches
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Running the new tuxedo suite
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Single Cell RNA-Seq Script and Data
TACC Overview
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TAG-Seq Preprocessing
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Testing for Differential Expression
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The Quickest Unix Refresher ever
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Transcript Quantification with Kallisto
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Tuxedo Suite For Splice Variant Analysis and Identifying Novel Transcripts II
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Using the Stampede2 Cluster
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Visualization using CummeRbund
Visualization using Integrated Genome Viewer (IGV)
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Where to get publicly available RNA-Seq data
Genome Variant Analysis Course 2014
Genome Variant Analysis Course 2015
Genome Variant Analysis Course 2016
Genome Variant Analysis Course 2017
Genome Variant Analysis Course 2019
Genome Variant Analysis Course 2020
Genome Variant Analysis Course 2021
Genome Variant Analysis Course 2022
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Introduction to NGS Short Course 2015
Introduction to RAD-seq 2018
Introduction to RAD-seq short course 2017
Introduction to RNA Seq Course 2014
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Introduction to RNA Seq Short Course Commands
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Introduction To TACC Short Course Cheats
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NGS RNA-seq exploration short course
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Introduction to TACC (Video Tutorials):
Genome Variant Analysis Course 2023
SSC Intro to NGS Bioinformatics Course
BME 383J Course Content
Obsolete NGS course materials
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Relevant classes offered at UT System Schools
Short Training Topics
Software
How to join the BioITeam
File lists
Bioinformatic Jobs at UT
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Wish list
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How-to articles
Appsoma-based pipeline development
Byte Club
Blogs
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Bioinformatics Team (BioITeam) at the University of Texas
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Plotting DESEQ2 Results