Title: Core NGS Tools Home  
Owner: Wiki Administrator (JL)
Creator: Wiki Administrator (JL) May 05, 2014
Last Changed by: Anna Battenhouse May 27, 2025
Tiny Link: (useful for email) https://cloud.wikis.utexas.edu/wiki/x/CwA5Aw
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Hierarchy
Children (8)
    Page: Day 1: Intro to NGS, Linux and TACC
    Page: Day 2: TACC batch system and FASTQ files
    Page: Day 3: Working with raw sequences
    Page: Day 4: Alignment and BAM file manipulation
    Page: Day 5: Post-Alignment Analysis
    Page: Resources
    Page: Catch up
    Page: Archive
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Time Editor  
May 27, 2025 01:20 Anna Battenhouse View Changes
May 26, 2025 15:48 Anna Battenhouse View Changes
Jun 05, 2024 14:24 Anna Battenhouse View Changes
Jun 05, 2024 14:21 Anna Battenhouse View Changes
Jun 05, 2024 13:45 Anna Battenhouse  
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External Links (5)
    https://cloud.wikis.utexas.edu/wiki/spaces/CoreNGSTools/pag…
    https://utexas.atlassian.net/wiki/display/CbrsIntroUnix//So…
    https://utexas.zoom.us/j/97707074326
    https://utexas.atlassian.net/wiki/display/CoreNGSTools/
    https://utexas.atlassian.net/wiki/display/CoreNGSTools//Run…
Core NGS Tools (14)     Page: Filtering with SAMTools
    Page: File systems and transferring files
    Page: Decimal and Hexadecimal
    Page: Analysis using BEDTools
    Page: More Alignment exercises
    Page: Pre-processing raw sequences
    Home page: Core NGS Tools Home
    Page: Introduction
    Page: Working with FASTQ files
    Page: Core NGS Resources
    Page: Linux fundamentals
    Page: Data wrangling best practices
    Page: Getting started at TACC
    Page: The Basic Alignment Workflow