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Title:	Stampede2 Breseq Tutorial GVA2022
Owner:	Deatherage, Daniel E
Creator:	Deatherage, Daniel E	Jun 20, 2022
Last Changed by:	Deatherage, Daniel E	Jun 21, 2022
Tiny Link: (useful for email)	https://cloud.wikis.utexas.edu/wiki/x/3j3YAg
Export As:	Word · PDF

Bioinformatics Team (BioITeam) at the University of Texas (3)     Page: Advanced breseq GVA2022     Page: fastp - GVA2022     Page: Genome Assembly (SPAdes) -- GVA2022

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Time	Editor
Jun 21, 2022 17:21	Deatherage, Daniel E	View Changes
Jun 21, 2022 17:20	Deatherage, Daniel E	View Changes
Jun 21, 2022 14:16	Deatherage, Daniel E	View Changes
Jun 21, 2022 13:07	Deatherage, Daniel E	View Changes
Jun 21, 2022 12:10	Deatherage, Daniel E

External Links (10)
    www.ncbi.nlm.nih.gov/sra
    www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&Cmd=ShowDetailV…
    www.ncbi.nlm.nih.gov/pubmed/19838166
    barricklab.org/twiki/pub/Lab/ToolsBacterialGenomeResequenci…
    https://anaconda.org/
    barricklab.org/
    www.ncbi.nlm.nih.gov/nuccore/NC_012967.1
    https://anaconda.org/tiagodrm
    www.ebi.ac.uk/ena/data/view/SRR030257&display=html
    https://anaconda.org/bioconda/breseq

Bioinformatics Team (BioITeam) at the University of Texas (11)     Page: Linux and stampede2 Setup -- GVA2021     Page: Identifying mutations in microbial genomes (breseq)     Page: Single Nucleotide Variant (SNV) calling Tutorial GVA2021     Page: Read Mapping with bowtie2 Tutorial GVA2022     Page: Single Nucleotide Variant (SNV) calling Tutorial GVA2022     Page: Read Mapping with bowtie2 Tutorial GVA2021     Page: Launching an iDev session GVA2022     Page: Advanced breseq GVA2022     Page: Copying files from TACC to your personal computer.     Page: Genome Variant Analysis Course 2022     Page: Advanced variant calling tutorial (GVA14)