QIIme2

Overview


Learning objectives

  1. install QIIme2

Installation

THIS PAGE IS UNDER CONSTRUCTION AND IS NOT COMPLETE

FOLLOWING BLOCK DOES NOT RESULT IN A WORKING QIIMME2
#miniconda install
mkdir -p $WORK/src/miniconda
cd $WORK/src/miniconda
wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh
bash Miniconda3-latest-Linux-x86_64.sh
# hold enter to scroll through user agreement
# enter yes to agree to user agreement
# press enter to agree to installation location $HOME/miniconda3
# press enter to not change your pythonpath variable
logout
ssh back into tacc
cd $WORK/src
wget https://data.qiime2.org/distro/core/qiime2-2020.2-py36-linux-conda.yml
$HOME/miniconda3/bin/conda env create -n qiime2-2020.2 --file qiime2-2020.2-py36-linux-conda.yml



Tutorial:

https://github.com/LangilleLab/microbiome_helper/wiki/Amplicon-SOP-v2-(qiime2-2020.2)