Title: Genome Variant Analysis Course 2019  
Owner: Deatherage, Daniel E
Creator: Deatherage, Daniel E May 19, 2019
Last Changed by: Deatherage, Daniel E May 31, 2019
Tiny Link: (useful for email) https://cloud.wikis.utexas.edu/wiki/x/_R-YAg
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Bioinformatics Team (BioITeam) at the University of Texas (19)
    Page: Advanced breseq GVA2019
    Page: Annovar Annotations -- GVA2019
    Page: Bedtools tutorial -- GVA2019
    Page: Bedtools tutorial -- GVA2020
    Page: Evaluating and processing raw sequencing data GVA2019
    Page: Exome Capture Metrics GVA2019
    Page: Genome Analysis Toolkit (GATK) . -- GVA2019
    Page: Genome Assembly (SPAdes) -- GVA2019
    Page: Human Trios -- GVA2019
    Page: IGV Tutorial -- GVA2019
    Page: Linux and Lonestar 5 Setup -- GVA2019
    Page: Lonestar5 Breseq Tutorial GVA2019
    Page: Molecular Index Error correction GVA2019
    Page: MultiQC - fastQC summary tool -- GVA2019
    Page: Read Mapping with bowtie2 Tutorial GVA2019
    Page: Single Nucleotide Variant (SNV) calling Tutorial GVA2019
    Page: SSCS vs Trimmed Read Variant calls GVA2019
    Page: Structural Variant (SV) calling with SVdetect 2019
    Page: Using TACC's Job Submission System (and 2019 end of class review)
Hierarchy
Children (19)
    Page: Advanced breseq GVA2019
    Page: Annovar Annotations -- GVA2019
    Page: Bedtools tutorial -- GVA2019
    Page: Evaluating and processing raw sequencing data GVA2019
    Page: Exome Capture Metrics GVA2019
    Page: Genome Analysis Toolkit (GATK) . -- GVA2019
    Page: Genome Assembly (SPAdes) -- GVA2019
    Page: Human Trios -- GVA2019
    Page: IGV Tutorial -- GVA2019
    Page: Linux and Lonestar 5 Setup -- GVA2019
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Time Editor  
May 31, 2019 05:04 Deatherage, Daniel E View Changes
May 31, 2019 04:10 Deatherage, Daniel E View Changes
May 31, 2019 03:16 Deatherage, Daniel E View Changes
May 30, 2019 22:04 Deatherage, Daniel E View Changes
May 30, 2019 21:10 Deatherage, Daniel E  
Outgoing Links
External Links (4)
    https://utexas.atlassian.net/wiki/display/GSAF/About+Us#Sco…
    https://www.tacc.utexas.edu/
    barricklab.org/
    https://utdirect.utexas.edu/apps/campus/buildings/nlogon/fa…
Bioinformatics Team (BioITeam) at the University of Texas (19)     Page: Structural Variant (SV) calling with SVdetect 2019
    Page: Genome Variant Analysis Course 2019
    Page: Linux and Lonestar 5 Setup -- GVA2019
    Page: Advanced breseq GVA2019
    Page: Human Trios -- GVA2019
    Page: Annovar Annotations -- GVA2019
    Page: Exome Capture Metrics GVA2019
    Page: Evaluating and processing raw sequencing data GVA2019
    Page: Genome Assembly (SPAdes) -- GVA2019
    Page: Using TACC's Job Submission System (and 2019 end of class review)
    Page: Genome Analysis Toolkit (GATK) . -- GVA2019
    Page: Single Nucleotide Variant (SNV) calling Tutorial GVA2019
    Page: Bedtools tutorial -- GVA2019
    Page: Lonestar5 Breseq Tutorial GVA2019
    Page: Read Mapping with bowtie2 Tutorial GVA2019
    Page: IGV Tutorial -- GVA2019
    Page: MultiQC - fastQC summary tool -- GVA2019
    Page: Molecular Index Error correction GVA2019
    Page: SSCS vs Trimmed Read Variant calls GVA2019