MATLAB Tools T&T

Purpose

This page provides links to the IRC's GutHub MATLAB code repository as well as descriptions, instructions, and sample data.

Repository Location and List

The GitHib repository is located here:  https://github.com/utexas-irc/MATLAB-code

The list of tools includes:

• checkPNMode: a function that reports the mode of prescan normalization used to acquire a Siemens MR DICOM
• dcm2jpg: a function that will convert a DICOM image to a JPEG image
• dcmvolread: a function that will read all the DICOM files within a directory of a 3D scan, and order them for MPRs
• ernst: a script that will calculate the Ernst angle for an MRI scan given the TR and tissue T1
• movementtracker: a function that will read all MOSAIC DICOMs in a directory, coregister them (Affine), and plot the three rotational factors temporally
• nameLikeXnat: a function that will copy or rename all DICOMs in a directory using XNAT's naming convention
• nlv: a simple GUI-based DICOM viewer written for the NEU366L lab.  Rudimentary tools included.
• splitSiemensScans: a function that will take a bulk scan DICOM directory and split all the individual series into respective folders with intuitive names
• v3: a simple 3 axis viewer for 3D datasets (usually used with dcmvolread to import the image data)