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MATLAB Tools T&T

MATLAB Tools T&T

Jul 16, 2015

Purpose

This page provides links to the IRC's GutHub MATLAB code repository as well as descriptions, instructions, and sample data.

Repository Location and List

The GitHib repository is located here:  https://github.com/utexas-irc/MATLAB-code

The list of tools includes:

  • checkPNMode: a function that reports the mode of prescan normalization used to acquire a Siemens MR DICOM

  • dcm2jpg: a function that will convert a DICOM image to a JPEG image

  • dcmvolread: a function that will read all the DICOM files within a directory of a 3D scan, and order them for MPRs

  • ernst: a script that will calculate the Ernst angle for an MRI scan given the TR and tissue T1

  • movementtracker: a function that will read all MOSAIC DICOMs in a directory, coregister them (Affine), and plot the three rotational factors temporally

  • nameLikeXnat: a function that will copy or rename all DICOMs in a directory using XNAT's naming convention

  • nlv: a simple GUI-based DICOM viewer written for the NEU366L lab.  Rudimentary tools included.

  • splitSiemensScans: a function that will take a bulk scan DICOM directory and split all the individual series into respective folders with intuitive names

  • v3: a simple 3 axis viewer for 3D datasets (usually used with dcmvolread to import the image data)