Stampede2 TACC/Unix Exercise

Jun 12, 2023

Get your data

Get set up

#IF YOU HAVE NOT COPIED OVER DATA ALREADY, DO THE FOLLOWING:
cds
mkdir my_rnaseq_course #this is where you'll be doing all the course exercises
cd my_rnaseq_course
cp -r /work2/projects/BioITeam/projects/courses/rnaseq_course/day_1_partA .  #for this specific exercise

Move into the correct directory

cds
cd my_rnaseq_course/day_1_partA/tacc_exercise

Exercise:

Run a simple command on each of these four files. We are going to just print the first 10 lines of each file.

First you need all the files. One is missing. Download it from here -> and transfer it to your stampede2 account (under day_1_partA/tacc_exercise)
Make a commands file with the unix commands.
Use launcher_creator.py to create a launcher to submit this job (command file).
Submit the job.
Check the queue.
Check the output files and log files.

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