University Wiki Service
Spaces
Apps
Templates
Create
Bioinformatics Team (BioITeam) at the University of Texas
All content
Calendars
Space settings
Shortcuts
File lists
File lists
This trigger is hidden
How-to articles
How-to articles
This trigger is hidden
Content
Results will update as you type.
Bioinformatics Services
•
CBRS Mini Symposium
•
BCG Full Service Pipelines
zArchive
TACC stuff
•
Old Home page
Old BCG Full Service Pipelines
Training
Bioinformatics Courses and Content
Introduction to RNA Seq Course
Genome Variant Analysis Course 2014
Genome Variant Analysis Course 2015
Genome Variant Analysis Course 2016
Genome Variant Analysis Course 2017
Genome Variant Analysis Course 2019
Genome Variant Analysis Course 2020
Genome Variant Analysis Course 2021
Genome Variant Analysis Course 2022
•
Accessing stampede2 via ssh on MacOs GVA2022
•
Accessing stampede2 via ssh on Windows10 GVA 2022
•
Advanced bowtie2 -- GVA2022
•
Advanced breseq GVA2022
•
Annotating plasmids with pLannotate
•
Annovar 2022
•
Bedtools tutorial -- GVA2022
•
Breseq with multiple references GVA2022
•
Evaluating and processing raw sequencing data GVA2022
•
Exome Capture Metrics GVA2022
•
fastp - GVA2022
•
Genome Analysis Toolkit (GATK) . -- GVA2022
•
Genome Assembly (SPAdes) -- GVA2022
•
GVA2022 - Class Review
•
GVA2022 Day 1 Environment Checkup and Catchup
•
GVA Tutorial Template
•
Human Trios -- GVA2022
•
IGV Tutorial -- GVA2022
•
Launching an iDev session GVA2022
•
Linux and stampede2 Setup -- GVA2022
•
Molecular Index Error correction GVA2022
•
MultiQC - fastQC summary tool -- GVA2022
•
Novel DNA Identification -- GVA2022
•
Prokka Annotations -- GVA2022
•
Read Mapping with bowtie2 Tutorial GVA2022
•
Single Nucleotide Variant (SNV) calling Tutorial GVA2022
•
SSCS vs Trimmed Read Variant calls GVA2022
•
Stampede2 Breseq Tutorial GVA2022
•
Structural Variant (SV) calling with SVdetect 2022
•
Introduction to NGS Short Course 2015
Introduction to RAD-seq 2018
Introduction to RAD-seq short course 2017
Introduction to RNA Seq Course 2014
•
Introduction to RNA Seq Short Course Commands
•
Introduction To TACC Short Course Cheats
•
NGS RNA-seq exploration short course
•
Introduction to TACC (Video Tutorials):
Genome Variant Analysis Course 2023
SSC Intro to NGS Bioinformatics Course
BME 383J Course Content
Obsolete NGS course materials
•
Relevant classes offered at UT System Schools
Short Training Topics
Software
How to join the BioITeam
File lists
Bioinformatic Jobs at UT
•
Wish list
•
How-to articles
Appsoma-based pipeline development
Byte Club
Blogs
You‘re viewing this with anonymous access, so some content might be blocked.
Close
Bioinformatics Team (BioITeam) at the University of Texas
/
GVA Tutorial Template
GVA Tutorial Template
Deatherage, Daniel E
Owned by
Deatherage, Daniel E
Jun 23, 2022
Loading data...
Overview
Learning Objectives
Installing (program)
Get Some Data
Running (program)
Evaluating output
Next steps and optional exercises
Related content
Info icon
Collapse
GVA2023 - Class Review
GVA2023 - Class Review
Bioinformatics Team (BioITeam) at the University of Texas
More like this
GVA2022 - Class Review