TACC/Unix Exercise

May 18, 2014

Get your data

Get set up

cds
mkdir my_rnaseq_course #this is where you'll be doing all the course exercises
cd my_rnaseq_course
 
cp -r /corral-repl/utexas/BioITeam/rnaseq_course/tacc_exercise .  #for this specific exercise
cd tacc_exercise

Exercise:

Run a simple command on each of these four files. We are going to just print the first 10 lines of each file.

Make a commands file with the unix commands.
Use launcher_creator.py to create a launcher to submit this job (command file).
Submit the job.
Check the queue.
Check the output files and log files.

BACK TO COURSE OUTLINE