Day 2 Take Away Points
Let's recap what we learned yesterday:
We looked at mapping reads to the genome and transcriptome.
1. Unspliced mapping: BWA. We used BWA to map reads from two conditions C1 and C2 to our transcriptome.
2. Spliced mapping: HISAT2/STAR. We used STAR to map reads from two conditions C1 and C2 to our genome.
3. Pseudomapping using Kallisto: We used Kallisto to quantify transcripts using reads from two conditions C1 and C2.
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