Logistics

SSH into lonestar6 and copy files needed for today's exercises.

Get set up for the exercises

ssh <username>@ls6.tacc.utexas.edu

#If you are getting the following error: Corrupted MAC on input, then try this:
ssh -m hmac-sha2-512 username@ls6.tacc.utexas.edu

cds
cd my_rnaseq_course
cp -r /work2/projects/BioITeam/projects/courses/rnaseq_course/day_2/reference_2025/STAR_genome day_2/reference/
cp -r /work2/projects/BioITeam/projects/courses/rnaseq_course/day_2/kallisto_exercise day_2/
cp -r /work2/projects/BioITeam/projects/courses/rnaseq_course/day_3_partA .
cp -r /work2/projects/BioITeam/projects/courses/rnaseq_course/day_3_partB .

If you've already copied data over, check that the data files required are there.

Get set up for the exercises

ssh <username>@ls6.tacc.utexas.edu

#If you are getting the following error: Corrupted MAC on input, then try this:
ssh -m hmac-sha2-512 username@ls6.tacc.utexas.edu

cds
cd my_rnaseq_course
ls day_3_partA/gene_counting_exercise/
ls day_3_partA/gene_expression_exercise/

Open another SSH session and request a idev session

set up idev session in another tab

ssh <username>@ls6.tacc.utexas.edu

idev -m 120 -q normal -A OTH21164 -r rna-seq-class-0611
#Leave out -r rna-seq-class-0611 if your TACC id is not part of the reservation

Go back to Course Outline